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1

Identity inference of genomic data using long-range familial searches

Erlich, Yaniv, Shor, Tal, Pe’er, Itsik, Carmi, Shai

Journal:

Year:

2018

Language:

english

File:

PDF, 1.10 MB

english, 2018

2

Epidemic Threshold for the Susceptible-Infectious-Susceptible Model on Random Networks

Parshani, Roni, Carmi, Shai, Havlin, Shlomo

Journal:

Physical Review Letters

Year:

2010

Language:

english

File:

PDF, 211 KB

english, 2010

3

Fractional Feynman-Kac Equation for Non-Brownian Functionals

Turgeman, Lior, Carmi, Shai, Barkai, Eli

Journal:

Physical Review Letters

Year:

2009

Language:

english

File:

PDF, 169 KB

english, 2009

4

Fractional Feynman-Kac equation for weak ergodicity breaking

Carmi, Shai, Barkai, Eli

Journal:

Physical Review E

Year:

2011

Language:

english

File:

PDF, 508 KB

english, 2011

5

Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins

Carmi, Shai, Hui, Ken Y., Kochav, Ethan, Liu, Xinmin, Xue, James, Grady, Fillan, Guha, Saurav, Upadhyay, Kinnari, Ben-Avraham, Dan, Mukherjee, Semanti, Bowen, B. Monica, Thomas, Tinu, Vijai, Joseph, C

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.00 MB

english, 2014

6

Stereovision-Based Estimation of Relative Dynamics Between Noncooperative Satellites: Theory and Experiments

Segal, Shai, Carmi, Avishy, Gurfil, Pini

Journal:

IEEE Transactions on Control Systems Technology

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

7

Asymptotic Behavior of the Kleinberg Model

Carmi, Shai, Carter, Stephen, Sun, Jie, ben-Avraham, Daniel

Journal:

Physical Review Letters

Year:

2009

Language:

english

File:

PDF, 485 KB

english, 2009

8

Expanded genetic screening panel for the Ashkenazi Jewish population

Baskovich, Brett, Hiraki, Susan, Upadhyay, Kinnari, Meyer, Philip, Carmi, Shai, Barzilai, Nir, Darvasi, Ariel, Ozelius, Laurie, Peter, Inga, Cho, Judy H., Atzmon, Gil, Clark, Lorraine, Yu, Jin, Lencz,

Journal:

Genetics in Medicine

Year:

2015

Language:

english

File:

PDF, 483 KB

english, 2015

9

Off the street phasing (OTSP): free no hassle haplotype phasing for molecular PGD applications

Altarescu, Gheona, Zahdeh, Fouad, Kling, Yehuda, Renbaum, Paul, Levy-Lahad, Ephrat, Carmi, Shai, Zeevi, David A.

Journal:

Reproductive BioMedicine Online

Year:

2018

Language:

english

File:

PDF, 54 KB

english, 2018

10

Holographic two-photon activation for synthetic optogenetics

Carmi, Ido, De Battista, Marco, Maddalena, Laura, Carroll, Elizabeth C., Kienzler, Michael A., Berlin, Shai

Journal:

Nature Protocols

Year:

2019

Language:

english

File:

PDF, 3.71 MB

english, 2019

11

On Distributions of Functionals of Anomalous Diffusion Paths

Shai Carmi, Lior Turgeman, Eli Barkai

Journal:

Journal of Statistical Physics

Year:

2010

Language:

english

File:

PDF, 706 KB

english, 2010

12

Anomalous electrical and frictionless flow conductance in complex networks

Eduardo López, Shai Carmi, Shlomo Havlin, Sergey V. Buldyrev, H. Eugene Stanley

Journal:

Physica D: Nonlinear Phenomena

Year:

2006

Language:

english

File:

PDF, 951 KB

english, 2006

13

TGF-β signaling through SMAD2/3 induces the quiescent microglial phenotype within the CNS environment

Shai Abutbul, Jenny Shapiro, Irit Szaingurten-Solodkin, Nitzan Levy, Yaron Carmy, Rona Baron, Steffen Jung, Alon Monsonego

Journal:

Year:

2012

Language:

english

File:

PDF, 1.40 MB

english, 2012

14

Efficiency of complex production in changing environment

Shai Carmi, Erez Y Levanon, Eli Eisenberg

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 1.15 MB

english, 2009

15

Utilizing ESEEM Spectroscopy to Locate the Position of Specific Regions of Membrane-Active Peptides within Model Membranes

Carmieli, Raanan, Papo, Niv, Zimmermann, Herbert, Potapov, Alexey, Shai, Yechiel, Goldfarb, Daniella

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 305 KB

english, 2006

16

[IEEE 2011 IEEE Aerospace Conference - Big Sky, USA (2011.03.5-2011.03.12)] 2011 Aerospace Conference - Vision-based relative state estimation of non-cooperative spacecraft under modeling uncertainty

Segal, Shai, Carmi, Avishy, Gurfil, Pini

Year:

2011

Language:

english

File:

PDF, 215 KB

english, 2011

17

[American Institute of Aeronautics and Astronautics AIAA Guidance, Navigation, and Control Conference - Portland, Oregon (08 August 2011 - 11 August 2011)] AIAA Guidance, Navigation, and Control Conference - Experimental Validation of Stereoscopic Satellite Relative State Estimation

Segal, Shai, Carmi, Avishy, Gurfil, Pini

Year:

2011

Language:

english

File:

PDF, 903 KB

english, 2011

18

Effects of sewage-water contamination on the immune response of a desert bat

Pilosof, Shai, Korine, Carmi, Moore, Marianne S., Krasnov, Boris R.

Journal:

Mammalian Biology - Zeitschrift für Säugetierkunde

Year:

2014

Language:

english

File:

PDF, 479 KB

english, 2014

19

Résumés de mémoires de Master Recherche. Université Paris-XI, 2008-2009

Korine, Carmi, Daniel, Shai, Pinshow, Berry

Journal:

Revue d'Épidémiologie et de Santé Publique

Year:

2010

Language:

french

File:

PDF, 188 KB

french, 2010

20

Roost selection by female Hemprich's long-eared bats

Korine, Carmi, Daniel, Shai, Pinshow, Berry

Journal:

Behavioural Processes

Year:

2013

Language:

english

File:

PDF, 2.25 MB

english, 2013

21

A renewal theory approach to IBD sharing

Carmi, Shai, Wilton, Peter R., Wakeley, John, Pe’er, Itsik

Journal:

Theoretical Population Biology

Year:

2014

Language:

english

File:

PDF, 854 KB

english, 2014

22

Foraging Behavior of a Desert Dwelling Arthropod-Gleaning Bat ( Otonycteris hemprichii ) During Pregnancy and Nursing

Daniel, Shai, Korine, Carmi, Pinshow, Berry

Journal:

Acta Chiropterologica

Year:

2010

Language:

english

File:

PDF, 112 KB

english, 2010

23

Genotyping of geographically diverse Druze trios reveals substructure and a recent bottleneck

Zidan, Jamal, Ben-Avraham, Dan, Carmi, Shai, Maray, Taiseer, Friedman, Eitan, Atzmon, Gil

Journal:

European Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 806 KB

english, 2015

24

Connectivity and expression in protein networks: Proteins in a complex are uniformly expressed

Carmi, Shai, Levanon, Erez Y., Havlin, Shlomo, Eisenberg, Eli

Journal:

Physical Review E

Year:

2006

Language:

english

File:

PDF, 250 KB

english, 2006

25

Priority diffusion model in lattices and complex networks

Maragakis, Michalis, Carmi, Shai, ben-Avraham, Daniel, Havlin, Shlomo, Argyrakis, Panos

Journal:

Physical Review E

Year:

2008

Language:

english

File:

PDF, 228 KB

english, 2008

26

Random walk with priorities in communicationlike networks

Bastas, Nikolaos, Maragakis, Michalis, Argyrakis, Panos, ben-Avraham, Daniel, Havlin, Shlomo, Carmi, Shai

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 708 KB

english, 2013

27

Central-place foraging in nursing, arthropod-gleaning bats

Daniel, Shai, Korine, Carmi, Pinshow, Berry

Journal:

Canadian Journal of Zoology

Year:

2008

Language:

english

File:

PDF, 118 KB

english, 2008

28

Limited Path Percolation in Complex Networks

López, Eduardo, Parshani, Roni, Cohen, Reuven, Carmi, Shai, Havlin, Shlomo

Journal:

Physical Review Letters

Year:

2007

Language:

english

File:

PDF, 283 KB

english, 2007

29

Partition of networks into basins of attraction

Carmi, Shai, Krapivsky, P. L., ben-Avraham, Daniel

Journal:

Physical Review E

Year:

2008

Language:

english

File:

PDF, 512 KB

english, 2008

30

Two splicing factors carrying serine-arginine motifs, TSR1 and TSR1IP, regulate splicing, mRNA stability, and rRNA processing in Trypanosoma brucei

Gupta, Sachin Kumar, Chikne, Vaibhav, Eliaz, Dror, Tkacz, Itai Dov, Naboishchikov, Ilana, Carmi, Shai, Waldman Ben-Asher, Hiba, Michaeli, Shulamit

Journal:

Year:

2014

Language:

english

File:

PDF, 2.64 MB

english, 2014

31

A genome-wide map of hyper-edited RNA reveals numerous new sites

Porath, Hagit T., Carmi, Shai, Levanon, Erez Y.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 756 KB

english, 2014

32

Persistent ER Stress Induces the Spliced Leader RNA Silencing Pathway (SLS), Leading to Programmed Cell Death in Trypanosoma brucei

Goldshmidt, Hanoch, Matas, Devorah, Kabi, Anat, Carmi, Shai, Hope, Ronen, Michaeli, Shulamit, Mansfield, John M.

Journal:

Year:

2010

Language:

english

File:

PDF, 3.21 MB

english, 2010

33

Identification of Widespread Ultra-Edited Human RNAs

Carmi, Shai, Borukhov, Itamar, Levanon, Erez Y., Maizels, Nancy

Journal:

Year:

2011

Language:

english

File:

PDF, 860 KB

english, 2011

34

The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution

Kolev, Nikolay G., Franklin, Joseph B., Carmi, Shai, Shi, Huafang, Michaeli, Shulamit, Tschudi, Christian, Beverley, Stephen M.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.30 MB

english, 2010

35

Large-scale DNA editing of retrotransposons accelerates mammalian genome evolution

Carmi, Shai, Church, George M., Levanon, Erez Y.

Journal:

Nature Communications

Year:

2011

Language:

english

File:

PDF, 550 KB

english, 2011

36

An Ashkenazi founder mutation in the PKHD1 gene

Quint, Adina, Sagi, Michal, Carmi, Shai, Daum, Hagit, Macarov, Michal, Ben Neriah, Ziva, Meiner, Vardiela, Elpeleg, Orly, Lerer, Israela

Journal:

European Journal of Medical Genetics

Year:

2015

Language:

english

File:

PDF, 224 KB

english, 2015

37

Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs

Yang, Shuo, Carmi, Shai, Pe'er, Itsik

Journal:

Journal of Computational Biology

Year:

2016

Language:

english

File:

PDF, 831 KB

english, 2016

38

Expanding the phenotype of CRB2 mutations - A new ciliopathy syndrome?

Jaron, Ranit, Rosenfeld, Nuphar, Zahdeh, Fouad, Carmi, Shai, Beni-Adani, Liana, Doviner, Victoria, Picard, Elie, Segel, Reeval, Zeligson, Sharon, Carmel, Liran, Renbaum, Paul, Levy-Lahad, Ephrat

Journal:

Clinical Genetics

Year:

2016

Language:

english

File:

PDF, 463 KB

english, 2016

39

Transcriptome and proteome analyses and the role of atypical calpain protein and autophagy in the spliced leader silencing (SLS) pathway in Trypanosoma brucei

Hope, Ronen, Egarmina, Katarina, Voloshin, Konstantin, Ben-Asher, Hiba Waldman, Carmi, Shai, Eliaz, Dror, Drori, Yaron, Michaeli, Shulamit

Journal:

Molecular Microbiology

Year:

2016

Language:

english

File:

PDF, 8.30 MB

english, 2016

40

P-175 Pleiotropic Effects of Novel Functional LRRK2 Variation on Crohnʼs Disease and Parkinsonʼs Disease Risk

Hui, Ken, Fernandez-Hernandez, Heriberto, Hu, Jianzhong, Pankratz, Nathan, Rivas, Manuel, Carmi, Shai, Haritunians, Talin, Atzmon, Gil, Brant, Steven, Daly, Mark, Duerr, Richard, McGovern, Dermot, Ost

Journal:

Inflammatory Bowel Diseases

Year:

2016

Language:

english

File:

PDF, 114 KB

english, 2016

41

Genomic insights into the population structure and history of the Irish Travellers

Gilbert, Edmund, Carmi, Shai, Ennis, Sean, Wilson, James F., Cavalleri, Gianpiero L.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.56 MB

english, 2017

42

A non-zero variance of Tajima’s estimator for two sequences even for infinitely many unlinked loci

King, Léandra, Wakeley, John, Carmi, Shai

Journal:

Theoretical Population Biology

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

43

Differential analysis of mutations in the Jewish population and their implications for diseases

EINHORN, YARON, WEISSGLAS-VOLKOV, DAPHNA, CARMI, SHAI, OSTRER, HARRY, FRIEDMAN, EITAN, SHOMRON, NOAM

Journal:

Genetics Research

Year:

2017

Language:

english

File:

PDF, 378 KB

english, 2017

44

The effect of water contamination and host-related factors on ectoparasite load in an insectivorous bat

Korine, Carmi, Pilosof, Shai, Gross, Amit, Morales-Malacara, Juan B., Krasnov, Boris R.

Journal:

Parasitology Research

Year:

2017

Language:

english

File:

PDF, 749 KB

english, 2017

45

Functional variants in the LRRK2 gene confer shared effects on risk for Crohn’s disease and Parkinson’s disease

Hui, Ken Y., Fernandez-Hernandez, Heriberto, Hu, Jianzhong, Schaffner, Adam, Pankratz, Nathan, Hsu, Nai-Yun, Chuang, Ling-Shiang, Carmi, Shai, Villaverde, Nicole, Li, Xianting, Rivas, Manual, Levine,

Journal:

Science Translational Medicine

Year:

2018

Language:

english

File:

PDF, 1.82 MB

english, 2018

46

High-depth whole genome sequencing of an Ashkenazi Jewish reference panel: enhancing sensitivity, accuracy, and imputation

Lencz, Todd, Yu, Jin, Palmer, Cameron, Carmi, Shai, Ben-Avraham, Danny, Barzilai, Nir, Bressman, Susan, Darvasi, Ariel, Cho, Judy H., Clark, Lorraine N., Gümüş, Zeynep H., Joseph, Vijai, Klein, Robert

Journal:

Year:

2018

Language:

english

File:

PDF, 1.41 MB

english, 2018

47

Effects of Anthropogenic Disturbance and Climate on Patterns of Bat Fly Parasitism

Pilosof, Shai, Dick, Carl W., Korine, Carmi, Patterson, Bruce D., Krasnov, Boris R., Brigham, R. Mark

Journal:

Year:

2012

Language:

english

File:

PDF, 177 KB

english, 2012

48

A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure

Granot-Hershkovitz, Einat, Karasik, David, Friedlander, Yechiel, Rodriguez-Murillo, Laura, Dorajoo, Rajkumar, Liu, Jianjun, Sewda, Anshuman, Peter, Inga, Carmi, Shai, Hochner, Hagit

Journal:

European Journal of Human Genetics

Year:

2018

Language:

english

File:

PDF, 717 KB

english, 2018

49

POLD1 and POLE Gene Mutations in Jewish Cohorts of Early-Onset Colorectal Cancer and of Multiple Colorectal Adenomas

Rosner, Guy, Gluck, Nathan, Carmi, Shai, Bercovich, Dani, Fliss-Issakov, Naomi, Ben-Yehoyada, Merav, Aharon-Caspi, Sivan, Kellerman, Efrat, Strul, Hana, Shibolet, Oren, Kariv, Revital

Journal:

Diseases of the Colon & Rectum

Year:

2018

Language:

english

File:

PDF, 137 KB

english, 2018

50

FactorialHMM: Fast and exact inference in factorial hidden Markov models

Schweiger, Regev, Erlich, Yaniv, Carmi, Shai, Schwartz, Russell

Journal:

Year:

2018

Language:

english

File:

PDF, 322 KB

english, 2018

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